GenomicDistributionsData
This package is for version 3.15 of Bioconductor; for the stable, up-to-date release version, see GenomicDistributionsData.
Reference data for GenomicDistributions package
Bioconductor version: 3.15
This package provides ready to use reference data for GenomicDistributions package. Raw data was obtained from ensembldb and processed with helper functions. Data files are available for the following genome assemblies: hg19, hg38, mm9 and mm10.
Author: Michal Stolarczyk [aut], Kristyna Kupkova [aut, cre], Jose Verdezoto [aut], John Lawson [ctb], Jason Smith [ctb], Nathan C. Sheffield [ctb]
Maintainer: Kristyna Kupkova <kristynakupkova at gmail.com>
citation("GenomicDistributionsData")):
Installation
To install this package, start R (version "4.2") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("GenomicDistributionsData")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("GenomicDistributionsData")| 1. Getting started with GenomicDistributionsData | HTML | R Script |
| Reference Manual | ||
| NEWS | Text | |
| LICENSE | Text |
Details
| biocViews | ExperimentData, ExperimentHub, Genome |
| Version | 1.4.0 |
| License | BSD_2_clause + file LICENSE |
| Depends | R (>= 4.1) |
| Imports | ExperimentHub(>= 1.14.0), AnnotationHub, AnnotationFilter, data.table, utils, BSgenome, GenomeInfoDb, GenomicFeatures, GenomicRanges, ensembldb |
| System Requirements | |
| URL | |
| Bug Reports | http://github.com/databio/GenomicDistributionsData |
See More
| Suggests | knitr, BiocStyle, rmarkdown |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | GenomicDistributions |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | GenomicDistributionsData_1.4.0.tar.gz |
| Windows Binary | |
| macOS Binary (x86_64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/GenomicDistributionsData |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/GenomicDistributionsData |
| Package Short Url | https://bioconductor.org/packages/GenomicDistributionsData/ |
| Package Downloads Report | Download Stats |