wpm
This package is for version 3.15 of Bioconductor; for the stable, up-to-date release version, see wpm.
Well Plate Maker
Bioconductor version: 3.15
The Well-Plate Maker (WPM) is a shiny application deployed as an R package. Functions for a command-line/script use are also available. The WPM allows users to generate well plate maps to carry out their experiments while improving the handling of batch effects. In particular, it helps controlling the "plate effect" thanks to its ability to randomize samples over multiple well plates. The algorithm for placing the samples is inspired by the backtracking algorithm: the samples are placed at random while respecting specific spatial constraints.
Author: Helene Borges [aut, cre], Thomas Burger [aut]
Maintainer: Helene Borges <borges.helene.sophie at gmail.com>
citation("wpm")):
Installation
To install this package, start R (version "4.2") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("wpm")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("wpm")| How to use Well Plate Maker | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | BatchEffect, ExperimentalDesign, GUI, MassSpectrometry, Proteomics, Software |
| Version | 1.6.0 |
| In Bioconductor since | BioC 3.12 (R-4.0) (3.5 years) |
| License | Artistic-2.0 |
| Depends | R (>= 4.1.0) |
| Imports | utils, methods, cli, Biobase, SummarizedExperiment, config, golem, shiny, DT, ggplot2, dplyr, rlang, stringr, shinydashboard, shinyWidgets, shinycustomloader, RColorBrewer, logging |
| System Requirements | |
| URL | https://github.com/HelBor/wpm https://bioconductor.org/packages/release/bioc/html/wpm.html |
| Bug Reports | https://github.com/HelBor/wpm/issues |
See More
| Suggests | MSnbase, testthat, BiocStyle, knitr, rmarkdown |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | wpm_1.6.0.tar.gz |
| Windows Binary | wpm_1.6.0.zip |
| macOS Binary (x86_64) | wpm_1.6.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/wpm |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/wpm |
| Bioc Package Browser | https://code.bioconductor.org/browse/wpm/ |
| Package Short Url | https://bioconductor.org/packages/wpm/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.15 | Source Archive |