scTHI
This package is for version 3.15 of Bioconductor; for the stable, up-to-date release version, see scTHI.
Indentification of significantly activated ligand-receptor interactions across clusters of cells from single-cell RNA sequencing data
Bioconductor version: 3.15
scTHI is an R package to identify active pairs of ligand-receptors from single cells in order to study,among others, tumor-host interactions. scTHI contains a set of signatures to classify cells from the tumor microenvironment.
Author: Francesca Pia Caruso [aut], Michele Ceccarelli [aut, cre]
Maintainer: Michele Ceccarelli <m.ceccarelli at gmail.com>
citation("scTHI")):
Installation
To install this package, start R (version "4.2") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("scTHI")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("scTHI")| Using scTHI | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | SingleCell, Software |
| Version | 1.8.0 |
| In Bioconductor since | BioC 3.11 (R-4.0) (4 years) |
| License | GPL-2 |
| Depends | R (>= 4.0) |
| Imports | BiocParallel, Rtsne, grDevices, graphics, stats |
| System Requirements | |
| URL | |
| Bug Reports | https://github.com/miccec/scTHI/issues |
See More
| Suggests | scTHI.data, knitr, rmarkdown |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | scTHI_1.8.0.tar.gz |
| Windows Binary | scTHI_1.8.0.zip |
| macOS Binary (x86_64) | scTHI_1.8.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/scTHI |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/scTHI |
| Bioc Package Browser | https://code.bioconductor.org/browse/scTHI/ |
| Package Short Url | https://bioconductor.org/packages/scTHI/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.15 | Source Archive |