ptairMS
This package is for version 3.15 of Bioconductor; for the stable, up-to-date release version, see ptairMS.
Pre-processing PTR-TOF-MS Data
Bioconductor version: 3.15
This package implements a suite of methods to preprocess data from PTR-TOF-MS instruments (HDF5 format) and generates the 'sample by features' table of peak intensities in addition to the sample and feature metadata (as a singl
Author: camille Roquencourt [aut, cre]
Maintainer: camille Roquencourt <camille.roquencourt at hotmail.fr>
citation("ptairMS")):
Installation
To install this package, start R (version "4.2") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("ptairMS")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("ptairMS")| ptaiMS: Processing and analysis of PTR-TOF-MS data | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | Alignment, MassSpectrometry, Metabolomics, PeakDetection, Preprocessing, Software |
| Version | 1.4.1 |
| In Bioconductor since | BioC 3.13 (R-4.1) (3 years) |
| License | GPL-3 |
| Depends | |
| Imports | Biobase, bit64, chron, data.table, doParallel, DT, enviPat, foreach, ggplot2, graphics, grDevices, ggpubr, gridExtra, Hmisc, methods, minpack.lm, MSnbase, parallel, plotly, rhdf5, rlang, Rcpp, shiny, shinyscreenshot, signal, scales, stats, utils |
| System Requirements | |
| URL | |
| Bug Reports | https://github.com/camilleroquencourt/ptairMS/issues |
See More
| Suggests | knitr, rmarkdown, BiocStyle, testthat (>= 2.1.0), ptairData, ropls |
| Linking To | Rcpp |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | ptairMS_1.4.1.tar.gz |
| Windows Binary | ptairMS_1.4.1.zip |
| macOS Binary (x86_64) | ptairMS_1.4.1.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/ptairMS |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/ptairMS |
| Bioc Package Browser | https://code.bioconductor.org/browse/ptairMS/ |
| Package Short Url | https://bioconductor.org/packages/ptairMS/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.15 | Source Archive |