plyranges
This package is for version 3.15 of Bioconductor; for the stable, up-to-date release version, see plyranges.
A fluent interface for manipulating GenomicRanges
Bioconductor version: 3.15
A dplyr-like interface for interacting with the common Bioconductor classes Ranges and GenomicRanges. By providing a grammatical and consistent way of manipulating these classes their accessiblity for new Bioconductor users is hopefully increased.
Author: Stuart Lee [aut, cre] , Michael Lawrence [aut, ctb], Dianne Cook [aut, ctb], Spencer Nystrom [ctb]
Maintainer: Stuart Lee <stuart.andrew.lee at gmail.com>
citation("plyranges")
):
Installation
To install this package, start R (version "4.2") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("plyranges")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("plyranges")
Introduction | HTML | R Script |
Reference Manual | ||
NEWS | Text |
Details
biocViews | Coverage, DataRepresentation, Infrastructure, Software, WorkflowStep |
Version | 1.16.0 |
In Bioconductor since | BioC 3.7 (R-3.5) (6 years) |
License | Artistic-2.0 |
Depends | R (>= 3.5), BiocGenerics, IRanges(>= 2.12.0), GenomicRanges(>= 1.28.4) |
Imports | methods, dplyr, rlang (>= 0.2.0), magrittr, tidyselect (>= 1.0.0), rtracklayer, GenomicAlignments, GenomeInfoDb, Rsamtools, S4Vectors(>= 0.23.10), utils |
System Requirements | |
URL | |
Bug Reports | https://github.com/sa-lee/plyranges |
See More
Suggests | knitr, BiocStyle, rmarkdown, testthat (>= 2.1.0), HelloRanges, HelloRangesData, BSgenome.Hsapiens.UCSC.hg19, pasillaBamSubset, covr, ggplot2 |
Linking To | |
Enhances | |
Depends On Me | |
Imports Me | BOBaFIT, BUSpaRse, dasper, EpiCompare, fluentGenomics, InPAS, methylCC, multicrispr, nearBynding, nullranges, plotgardener |
Suggests Me | extraChIPs, memes, svaNUMT, svaRetro |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | plyranges_1.16.0.tar.gz |
Windows Binary | plyranges_1.16.0.zip |
macOS Binary (x86_64) | plyranges_1.16.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/plyranges |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/plyranges |
Bioc Package Browser | https://code.bioconductor.org/browse/plyranges/ |
Package Short Url | https://bioconductor.org/packages/plyranges/ |
Package Downloads Report | Download Stats |
Old Source Packages for BioC 3.15 | Source Archive |