pRolocGUI
This package is for version 3.15 of Bioconductor; for the stable, up-to-date release version, see pRolocGUI.
Interactive visualisation of spatial proteomics data
Bioconductor version: 3.15
The package pRolocGUI comprises functions to interactively visualise organelle (spatial) proteomics data on the basis of pRoloc, pRolocdata and shiny.
Author: Lisa Breckels [aut] , Thomas Naake [aut], Laurent Gatto [aut, cre]
Maintainer: Laurent Gatto <laurent.gatto at uclouvain.be>
citation("pRolocGUI")
):
Installation
To install this package, start R (version "4.2") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("pRolocGUI")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("pRolocGUI")
pRolocGUI - Interactive visualisation of spatial proteomics data | HTML | R Script |
Reference Manual | ||
pRoloc, pRolocdata and pRolocGUI | Video |
Details
biocViews | GUI, Proteomics, Software, Visualization |
Version | 2.6.0 |
In Bioconductor since | BioC 3.0 (R-3.1) (9.5 years) |
License | GPL-2 |
Depends | methods, R (>= 3.1.0), pRoloc(>= 1.27.6), Biobase, MSnbase(>= 2.1.11) |
Imports | shiny (>= 0.9.1), scales, dplyr, DT (>= 0.1.40), graphics, utils, ggplot2, shinydashboardPlus (>= 2.0.0), colourpicker, shinyhelper, shinyWidgets, shinyjs, colorspace, stats, grDevices, grid, BiocGenerics, shinydashboard |
System Requirements | |
URL | http://ComputationalProteomicsUnit.github.io/pRolocGUI/ |
Bug Reports | https://github.com/ComputationalProteomicsUnit/pRolocGUI/issues |
See More
Suggests | pRolocdata, knitr, BiocStyle(>= 2.5.19), rmarkdown |
Linking To | |
Enhances | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | pRolocGUI_2.6.0.tar.gz |
Windows Binary | pRolocGUI_2.6.0.zip |
macOS Binary (x86_64) | pRolocGUI_2.6.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/pRolocGUI |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/pRolocGUI |
Bioc Package Browser | https://code.bioconductor.org/browse/pRolocGUI/ |
Package Short Url | https://bioconductor.org/packages/pRolocGUI/ |
Package Downloads Report | Download Stats |
Old Source Packages for BioC 3.15 | Source Archive |