affy
This package is for version 3.15 of Bioconductor; for the stable, up-to-date release version, see affy.
Methods for Affymetrix Oligonucleotide Arrays
Bioconductor version: 3.15
The package contains functions for exploratory oligonucleotide array analysis. The dependence on tkWidgets only concerns few convenience functions. 'affy' is fully functional without it.
Author: Rafael A. Irizarry <rafa at ds.harvard.edu>, Laurent Gautier <lgautier at gmail.com>, Benjamin Milo Bolstad <bmb at bmbolstad.com>, and Crispin Miller <cmiller at picr.man.ac.uk> with contributions from Magnus Astrand <Magnus.Astrand at astrazeneca.com>, Leslie M. Cope <cope at mts.jhu.edu>, Robert Gentleman, Jeff Gentry, Conrad Halling <challing at agilixcorp.com>, Wolfgang Huber, James MacDonald <jmacdon at u.washington.edu>, Benjamin I. P. Rubinstein, Christopher Workman <workman at cbs.dtu.dk>, John Zhang
Maintainer: Rafael A. Irizarry <rafa at ds.harvard.edu>
citation("affy")
):
Installation
To install this package, start R (version "4.2") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("affy")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("affy")
1. Primer | R Script | |
2. Built-in Processing Methods | R Script | |
3. Custom Processing Methods | R Script | |
4. Import Methods | R Script | |
Reference Manual | ||
NEWS | Text |
Details
biocViews | Microarray, OneChannel, Preprocessing, Software |
Version | 1.74.0 |
In Bioconductor since | BioC 1.6 (R-2.1) or earlier (> 19 years) |
License | LGPL (>= 2.0) |
Depends | R (>= 2.8.0), BiocGenerics(>= 0.1.12), Biobase(>= 2.5.5) |
Imports | affyio(>= 1.13.3), BiocManager, graphics, grDevices, methods, preprocessCore, stats, utils, zlibbioc |
System Requirements | |
URL |
See More
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | affy_1.74.0.tar.gz |
Windows Binary | affy_1.74.0.zip (64-bit only) |
macOS Binary (x86_64) | affy_1.74.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/affy |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/affy |
Bioc Package Browser | https://code.bioconductor.org/browse/affy/ |
Package Short Url | https://bioconductor.org/packages/affy/ |
Package Downloads Report | Download Stats |
Old Source Packages for BioC 3.15 | Source Archive |