TileDBArray
This package is for version 3.15 of Bioconductor; for the stable, up-to-date release version, see TileDBArray.
Using TileDB as a DelayedArray Backend
Bioconductor version: 3.15
Implements a DelayedArray backend for reading and writing dense or sparse arrays in the TileDB format. The resulting TileDBArrays are compatible with all Bioconductor pipelines that can accept DelayedArray instances.
Author: Aaron Lun [aut, cre], Genentech, Inc. [cph]
Maintainer: Aaron Lun <infinite.monkeys.with.keyboards at gmail.com>
citation("TileDBArray")
):
Installation
To install this package, start R (version "4.2") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("TileDBArray")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("TileDBArray")
User guide | HTML | R Script |
Reference Manual | ||
LICENSE | Text |
Details
biocViews | DataRepresentation, Infrastructure, Software |
Version | 1.6.0 |
In Bioconductor since | BioC 3.12 (R-4.0) (3.5 years) |
License | MIT + file LICENSE |
Depends | DelayedArray(>= 0.15.16) |
Imports | methods, Rcpp, tiledb, S4Vectors |
System Requirements | |
URL | https://github.com/LTLA/TileDBArray |
Bug Reports | https://github.com/LTLA/TileDBArray |
See More
Suggests | knitr, Matrix, rmarkdown, BiocStyle, BiocParallel, testthat |
Linking To | Rcpp |
Enhances | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | TileDBArray_1.6.0.tar.gz |
Windows Binary | TileDBArray_1.6.0.zip |
macOS Binary (x86_64) | TileDBArray_1.6.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/TileDBArray |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/TileDBArray |
Bioc Package Browser | https://code.bioconductor.org/browse/TileDBArray/ |
Package Short Url | https://bioconductor.org/packages/TileDBArray/ |
Package Downloads Report | Download Stats |
Old Source Packages for BioC 3.15 | Source Archive |