GOSim
This package is for version 3.15 of Bioconductor; for the stable, up-to-date release version, see GOSim.
Computation of functional similarities between GO terms and gene products; GO enrichment analysis
Bioconductor version: 3.15
This package implements several functions useful for computing similarities between GO terms and gene products based on their GO annotation. Moreover it allows for computing a GO enrichment analysis
Author: Holger Froehlich <frohlich at bit.uni-bonn.de>
Maintainer: Holger Froehlich <frohlich at bit.uni-bonn.de>
citation("GOSim")
):
Installation
To install this package, start R (version "4.2") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("GOSim")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("GOSim")
GOsim | R Script | |
Reference Manual |
Details
biocViews | Clustering, GO, Pathways, Software |
Version | 1.34.0 |
In Bioconductor since | BioC 2.13 (R-3.0) (10.5 years) |
License | GPL (>= 2) |
Depends | GO.db, annotate |
Imports | org.Hs.eg.db, AnnotationDbi, topGO, cluster, flexmix, RBGL, graph, Matrix, corpcor, Rcpp |
System Requirements | |
URL |
See More
Suggests | |
Linking To | Rcpp |
Enhances | igraph |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | GOSim_1.34.0.tar.gz |
Windows Binary | GOSim_1.34.0.zip |
macOS Binary (x86_64) | GOSim_1.34.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/GOSim |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/GOSim |
Bioc Package Browser | https://code.bioconductor.org/browse/GOSim/ |
Package Short Url | https://bioconductor.org/packages/GOSim/ |
Package Downloads Report | Download Stats |
Old Source Packages for BioC 3.15 | Source Archive |