m6Aboost
This package is for version 3.14 of Bioconductor; for the stable, up-to-date release version, see m6Aboost.
m6Aboost
Bioconductor version: 3.14
This package can help user to run the m6Aboost model on their own miCLIP2 data. The package includes functions to assign the read counts and get the features to run the m6Aboost model. The miCLIP2 data should be stored in a GRanges object. More details can be found in the vignette.
Author: You Zhou [aut, cre] 
, Kathi Zarnack [aut]
Maintainer: You Zhou <youzhoulearning at gmail.com>
citation("m6Aboost")):
Installation
To install this package, start R (version "4.1") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("m6Aboost")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("m6Aboost")| m6Aboost Vignettes | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | Epigenetics, ExperimentHubSoftware, Genetics, Sequencing, Software |
| Version | 1.0.0 |
| In Bioconductor since | BioC 3.14 (R-4.1) (2.5 years) |
| License | Artistic-2.0 |
| Depends | S4Vectors, adabag, GenomicRanges, R (>= 4.1) |
| Imports | dplyr, rtracklayer, BSgenome, Biostrings, utils, methods, IRanges, ExperimentHub |
| System Requirements | |
| URL | https://github.com/ZarnackGroup/m6Aboost |
| Bug Reports | https://github.com/ZarnackGroup/m6Aboost/issues |
See More
| Suggests | knitr, rmarkdown, bookdown, testthat, BiocStyle, BSgenome.Mmusculus.UCSC.mm10 |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | m6Aboost_1.0.0.tar.gz |
| Windows Binary | m6Aboost_1.0.0.zip |
| macOS 10.13 (High Sierra) | m6Aboost_1.0.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/m6Aboost |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/m6Aboost |
| Bioc Package Browser | https://code.bioconductor.org/browse/m6Aboost/ |
| Package Short Url | https://bioconductor.org/packages/m6Aboost/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.14 | Source Archive |