infinityFlow
This package is for version 3.14 of Bioconductor; for the stable, up-to-date release version, see infinityFlow.
Augmenting Massively Parallel Cytometry Experiments Using Multivariate Non-Linear Regressions
Bioconductor version: 3.14
Pipeline to analyze and merge data files produced by BioLegend's LEGENDScreen or BD Human Cell Surface Marker Screening Panel (BD Lyoplates).
Author: Etienne Becht [cre, aut]
Maintainer: Etienne Becht <etienne.becht at protonmail.com>
Citation (from within R, enter
citation("infinityFlow")):
Installation
To install this package, start R (version "4.1") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("infinityFlow")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("infinityFlow")| Basic usage of the infinityFlow package | HTML | R Script |
| Training non default regression models | HTML | R Script |
| Reference Manual |
Details
| biocViews | CellBasedAssays, FlowCytometry, Proteomics, SingleCell, Software |
| Version | 1.4.0 |
| In Bioconductor since | BioC 3.12 (R-4.0) (3.5 years) |
| License | GPL-3 |
| Depends | R (>= 4.0.0), flowCore |
| Imports | stats, grDevices, utils, graphics, pbapply, matlab, png, raster, grid, uwot, gtools, Biobase, generics, parallel, methods, xgboost |
| System Requirements | |
| URL |
See More
| Suggests | knitr, rmarkdown, keras, tensorflow, glmnetUtils, e1071 |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | infinityFlow_1.4.0.tar.gz |
| Windows Binary | infinityFlow_1.4.0.zip |
| macOS 10.13 (High Sierra) | infinityFlow_1.4.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/infinityFlow |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/infinityFlow |
| Bioc Package Browser | https://code.bioconductor.org/browse/infinityFlow/ |
| Package Short Url | https://bioconductor.org/packages/infinityFlow/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.14 | Source Archive |