MsBackendRawFileReader
This package is for version 3.14 of Bioconductor; for the stable, up-to-date release version, see MsBackendRawFileReader.
Mass Spectrometry Backend for Reading Thermo Fisher Scientific raw Files
Bioconductor version: 3.14
implements a MsBackend for the Spectra package using Thermo Fisher Scientific's NewRawFileReader .Net libraries. The package is generalizing the functionality introduced by the rawrr package (Kockmann T. et al. (2020)
Author: Christian Panse [aut, cre] 
, Tobias Kockmann [aut]
Maintainer: Christian Panse <cp at fgcz.ethz.ch>
citation("MsBackendRawFileReader")):
Installation
To install this package, start R (version "4.1") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("MsBackendRawFileReader")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("MsBackendRawFileReader")| On Using and Extending the `MsBackendRawFileReader` Backend. | HTML | R Script |
| Reference Manual | ||
| NEWS | Text | |
| INSTALL | Text |
Details
| biocViews | MassSpectrometry, Metabolomics, Proteomics, Software |
| Version | 1.0.0 |
| In Bioconductor since | BioC 3.14 (R-4.1) (2.5 years) |
| License | GPL-3 |
| Depends | R (>= 4.1), methods, Spectra(>= 1.2) |
| Imports | MsCoreUtils, S4Vectors, IRanges, rawrr(>= 1.1.14), utils, BiocParallel |
| System Requirements | mono-runtime 4.x or higher (including System.Data library) on Linux/macOS, .Net Framework (>= 4.5.1) on Microsoft Windows. |
| URL | https://github.com/fgcz/MsBackendRawFileReader |
| Bug Reports | https://github.com/fgcz/MsBackendRawFileReader/issues |
See More
| Suggests | BiocStyle(>= 2.5), ExperimentHub, knitr, lattice, mzR, protViz (>= 0.7), rmarkdown, tartare(>= 1.5), testthat |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | MsBackendRawFileReader_1.0.0.tar.gz |
| Windows Binary | MsBackendRawFileReader_1.0.0.zip (32- & 64-bit) |
| macOS 10.13 (High Sierra) | MsBackendRawFileReader_1.0.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/MsBackendRawFileReader |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/MsBackendRawFileReader |
| Bioc Package Browser | https://code.bioconductor.org/browse/MsBackendRawFileReader/ |
| Package Short Url | https://bioconductor.org/packages/MsBackendRawFileReader/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.14 | Source Archive |