DExMA
This package is for version 3.14 of Bioconductor; for the stable, up-to-date release version, see DExMA.
Differential Expression Meta-Analysis
Bioconductor version: 3.14
performing all the steps of gene expression meta-analysis considering the possible existence of missing genes. It provides the necessary functions to be able to perform the different methods of gene expression meta-analysis. In addition, it contains functions to apply quality controls, download GEO datasets and show graphical representations of the results.
Author: Juan Antonio Villatoro-García [aut, cre], Pedro Carmona-Sáez [aut]
Maintainer: Juan Antonio Villatoro-García <juanantoniovillatorogarcia at gmail.com>
citation("DExMA")):
Installation
To install this package, start R (version "4.1") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("DExMA")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("DExMA")| Differential Expression Meta-Analysis with DExMA package | R Script | |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | DifferentialExpression, GeneExpression, QualityControl, Software, StatisticalMethod |
| Version | 1.2.1 |
| In Bioconductor since | BioC 3.13 (R-4.1) (3 years) |
| License | GPL-2 |
| Depends | R (>= 4.1), DExMAdata |
| Imports | Biobase, GEOquery, impute, limma, pheatmap, plyr, scales, snpStats, sva, swamp, stats, methods, utils, bnstruct |
| System Requirements | |
| URL |
See More
| Suggests | BiocStyle, qpdf, BiocGenerics, RUnit |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | DExMA_1.2.1.tar.gz |
| Windows Binary | DExMA_1.2.1.zip |
| macOS 10.13 (High Sierra) | DExMA_1.2.1.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/DExMA |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/DExMA |
| Bioc Package Browser | https://code.bioconductor.org/browse/DExMA/ |
| Package Short Url | https://bioconductor.org/packages/DExMA/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.14 | Source Archive |