macrophage

This package is for version 3.13 of Bioconductor; for the stable, up-to-date release version, see macrophage.

Human macrophage immune response

Bioconductor version: 3.13

This package provides the output of running Salmon on a set of 24 RNA-seq samples from Alasoo, et al. "Shared genetic effects on chromatin and gene expression indicate a role for enhancer priming in immune response", published in Nature Genetics, January 2018. For details on version numbers and how the samples were processed see the package vignette.

Author: Michael Love

Maintainer: Michael Love <michaelisaiahlove at gmail.com>

Citation (from within R, enter citation("macrophage")):

Installation

To install this package, start R (version "4.1") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("macrophage")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("macrophage")

Salmon quantifications for human macrophage immune response experiment	HTML	R Script
Reference Manual	PDF

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	ExperimentData, RNASeqData, SequencingData
Version	1.8.0
License	GPL (>= 2)
Depends	R (>= 3.5.0)
Imports
System Requirements
URL

Suggests	knitr, markdown
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me	fishpond, fluentGenomics, GeneTonic, quantiseqr
Links To Me
Build Report	Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	macrophage_1.8.0.tar.gz
Windows Binary
macOS 10.13 (High Sierra)
Source Repository	git clone https://git.bioconductor.org/packages/macrophage
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/macrophage
Package Short Url	https://bioconductor.org/packages/macrophage/
Package Downloads Report	Download Stats