MMAPPR2data

This package is for version 3.12 of Bioconductor; for the stable, up-to-date release version, see MMAPPR2data.

Sample Data for MMAPPR2

Bioconductor version: 3.12

Contains data for illustration purposes in the MMAPPR2 package, namely simulated BAM files containing RNA-Seq data for a mutation in the slc24a5 gene, taken from the GRCz11 genome. Also contains reference sequence and annotation files for the region.

Author: Kyle Johnsen [aut], Jonathon Hill [cre]

Maintainer: Jonathon Hill <jhill at byu.edu>

Citation (from within R, enter citation("MMAPPR2data")):

Installation

To install this package, start R (version "4.0") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("MMAPPR2data")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MMAPPR2data")

Using MMAPPR2data Resources	HTML	R Script
Reference Manual	PDF
NEWS	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	Danio_rerio_Data, ExperimentData, Genome, RNASeqData, SequencingData
Version	1.4.0
License	GPL-3
Depends	R (>= 3.6.0)
Imports	Rsamtools
System Requirements
URL	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3613585/ https://github.com/kjohnsen/MMAPPR2

Suggests	knitr, rmarkdown, BiocStyle, roxygen2, seqinr, readr
Linking To
Enhances	MMAPPR2
Depends On Me
Imports Me
Suggests Me	MMAPPR2
Links To Me
Build Report	Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	MMAPPR2data_1.4.0.tar.gz
Windows Binary
macOS 10.13 (High Sierra)
Source Repository	git clone https://git.bioconductor.org/packages/MMAPPR2data
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/MMAPPR2data
Package Short Url	https://bioconductor.org/packages/MMAPPR2data/
Package Downloads Report	Download Stats