FunciSNP.data
This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.
This package is for version 3.12 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see FunciSNP.data.
Various data sets for use with the FunciSNP package
Bioconductor version: 3.12
Data sets needed for FunciSNP to integrate information from GWAS, 1000genomes and chromatin feature, in order to identify functional SNP in coding or non-coding regions.
Author: Simon G. Coetzee <simon at simoncoetzee.com> and Houtan Noushmehr, PhD <houtan at usp.br>
Maintainer: Simon G. Coetzee <scoetzee at gmail.com>
citation("FunciSNP.data")):
Installation
To install this package, start R (version "4.0") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("FunciSNP.data")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
| Reference Manual |
Details
| biocViews | ENCODE, ExperimentData, Project1000genomes, SNPData |
| Version | 1.26.0 |
| License | GPL-3 |
| Depends | R (>= 2.14.0), IRanges |
| Imports | rtracklayer |
| System Requirements | |
| URL | http://coetzeeseq.usc.edu/publication/Coetzee_SG_et_al_2012/ |
See More
| Suggests | |
| Linking To | |
| Enhances | |
| Depends On Me | FunciSNP |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | |
| Windows Binary | |
| macOS 10.13 (High Sierra) | |
| Source Repository | git clone https://git.bioconductor.org/packages/FunciSNP.data |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/FunciSNP.data |
| Package Short Url | https://bioconductor.org/packages/FunciSNP.data/ |
| Package Downloads Report | Download Stats |