CLLmethylation
This package is for version 3.12 of Bioconductor; for the stable, up-to-date release version, see CLLmethylation.
Methylation data of primary CLL samples in PACE project
Bioconductor version: 3.12
The package includes DNA methylation data for the primary Chronic Lymphocytic Leukemia samples included in the Primary Blood Cancer Encyclopedia (PACE) project. Raw data from the 450k DNA methylation arrays is stored in the European Genome-Phenome Archive (EGA) under accession number EGAS0000100174. For more information concerning the project please refer to the paper "Drug-perturbation-based stratification of blood cancer" by Dietrich S, Oles M, Lu J et al., J. Clin. Invest. (2018) and R/Bioconductor package BloodCancerMultiOmics2017.
Author: Malgorzata Oles, Andreas Mock
Maintainer: Malgorzata Oles <dr.malgorzata.oles at gmail.com>, Andreas Mock <andreas.mock at embl.de>
citation("CLLmethylation")):
Installation
To install this package, start R (version "4.0") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("CLLmethylation")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("CLLmethylation")| CLLmethylation | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | CancerData, DiseaseModel, ExperimentData, LeukemiaCancerData |
| Version | 1.10.0 |
| License | LGPL |
| Depends | R (>= 3.5.0) |
| Imports | SummarizedExperiment, ExperimentHub |
| System Requirements | |
| URL |
See More
| Suggests | BiocStyle, ggplot2, knitr, rmarkdown |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | CLLmethylation_1.10.0.tar.gz |
| Windows Binary | |
| macOS 10.13 (High Sierra) | |
| Source Repository | git clone https://git.bioconductor.org/packages/CLLmethylation |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/CLLmethylation |
| Package Short Url | https://bioconductor.org/packages/CLLmethylation/ |
| Package Downloads Report | Download Stats |