targetscan.Mm.eg.db

This package is for version 3.12 of Bioconductor; for the stable, up-to-date release version, see targetscan.Mm.eg.db.

TargetScan miRNA target predictions for mouse

Bioconductor version: 3.12

TargetScan miRNA target predictions for mouse assembled using data from the TargetScan website. TargetScan predicts biological targets of miRNAs by searching for the presence of conserved 8mer and 7mer sites that match the seed region of each miRNA. Also identified are sites with mismatches in the seed region that are compensated by conserved 3' pairing. In mammals, predictions are ranked based on the predicted efficacy of targeting as calculated using the context scores of the sites.

Author: Gabor Csardi <Gabor.Csardi at unil.ch>

Maintainer: James F. Reid <james.reid at ifom-ieo-campus.it>

Citation (from within R, enter citation("targetscan.Mm.eg.db")):

Installation

To install this package, start R (version "4.0") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("targetscan.Mm.eg.db")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation


Reference Manual	PDF
LICENSE	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	AnnotationData, FunctionalAnnotation
Version	0.6.1
License	file LICENSE
Depends	R (>= 2.7.0), methods, AnnotationDbi(>= 1.18.3)
Imports	methods, AnnotationDbi
System Requirements
URL

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Depends On Me
Imports Me
Suggests Me	MmPalateMiRNA
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	targetscan.Mm.eg.db_0.6.1.tar.gz
Windows Binary
macOS 10.13 (High Sierra)
Package Short Url	https://bioconductor.org/packages/targetscan.Mm.eg.db/
Package Downloads Report	Download Stats