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rTRMui

This package is for version 3.12 of Bioconductor; for the stable, up-to-date release version, see rTRMui.

A shiny user interface for rTRM


Bioconductor version: 3.12

This package provides a web interface to compute transcriptional regulatory modules with rTRM.

Author: Diego Diez

Maintainer: Diego Diez <diego10ruiz at gmail.com>

Citation (from within R, enter citation("rTRMui")):

Installation

To install this package, start R (version "4.0") and enter: 


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("rTRMui")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("rTRMui")
Introduction to rTRMui PDF R Script
Reference Manual PDF
NEWS Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews GUI, GeneRegulation, GraphAndNetwork, Network, Software, Transcription
Version 1.28.0
In Bioconductor since BioC 2.13 (R-3.0) (10.5 years)
License GPL-3
Depends
Imports shiny (>= 0.9), rTRM, MotifDb, org.Hs.eg.db, org.Mm.eg.db
System Requirements
URL https://github.com/ddiez/rTRMui
Bug Reports https://github.com/ddiez/rTRMui/issues
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Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package rTRMui_1.28.0.tar.gz
Windows Binary rTRMui_1.28.0.zip
macOS 10.13 (High Sierra) rTRMui_1.28.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/rTRMui
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/rTRMui
Bioc Package Browser https://code.bioconductor.org/browse/rTRMui/
Package Short Url https://bioconductor.org/packages/rTRMui/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.12 Source Archive