microbiome
This package is for version 3.12 of Bioconductor; for the stable, up-to-date release version, see microbiome.
Microbiome Analytics
Bioconductor version: 3.12
Utilities for microbiome analysis.
Author: Leo Lahti [aut, cre], Sudarshan Shetty [aut]
Maintainer: Leo Lahti <leo.lahti at iki.fi>
Citation (from within R, enter
citation("microbiome")):
Installation
To install this package, start R (version "4.0") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("microbiome")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("microbiome")| microbiome R package | HTML | R Script |
| Reference Manual | ||
| NEWS | Text | |
| LICENSE | Text |
Details
| biocViews | Metagenomics, Microbiome, Sequencing, Software, SystemsBiology |
| Version | 1.12.0 |
| In Bioconductor since | BioC 3.6 (R-3.4) (6.5 years) |
| License | BSD_2_clause + file LICENSE |
| Depends | R (>= 3.6.0), phyloseq, ggplot2 |
| Imports | dplyr, reshape2, Rtsne, scales, stats, tibble, tidyr, utils, vegan |
| System Requirements | |
| URL | http://microbiome.github.io/microbiome |
| Bug Reports | https://github.com/microbiome/microbiome/issues |
See More
| Suggests | BiocGenerics, BiocStyle, Cairo, knitcitations, knitr, rmarkdown, testthat |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | ANCOMBC |
| Suggests Me | ANCOMBC |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | microbiome_1.12.0.tar.gz |
| Windows Binary | microbiome_1.12.0.zip |
| macOS 10.13 (High Sierra) | microbiome_1.12.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/microbiome |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/microbiome |
| Bioc Package Browser | https://code.bioconductor.org/browse/microbiome/ |
| Package Short Url | https://bioconductor.org/packages/microbiome/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.12 | Source Archive |