cellbaseR
This package is for version 3.12 of Bioconductor; for the stable, up-to-date release version, see cellbaseR.
Querying annotation data from the high performance Cellbase web
Bioconductor version: 3.12
This R package makes use of the exhaustive RESTful Web service API that has been implemented for the Cellabase database. It enable researchers to query and obtain a wealth of biological information from a single database saving a lot of time. Another benefit is that researchers can easily make queries about different biological topics and link all this information together as all information is integrated.
Author: Mohammed OE Abdallah
Maintainer: Mohammed OE Abdallah <melsiddieg at gmail.com>
citation("cellbaseR")):
Installation
To install this package, start R (version "4.0") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("cellbaseR")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("cellbaseR")| Simplifying Genomic Annotations in R | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | Annotation, Software, VariantAnnotation |
| Version | 1.14.0 |
| In Bioconductor since | BioC 3.5 (R-3.4) (7 years) |
| License | Apache License (== 2.0) |
| Depends | R (>= 3.4) |
| Imports | methods, jsonlite, httr, data.table, pbapply, tidyr, R.utils, Rsamtools, BiocParallel, foreach, utils, parallel, doParallel |
| System Requirements | |
| URL | https://github.com/melsiddieg/cellbaseR |
See More
| Suggests | BiocStyle, knitr, rmarkdown, Gviz, VariantAnnotation |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | cellbaseR_1.14.0.tar.gz |
| Windows Binary | cellbaseR_1.14.0.zip |
| macOS 10.13 (High Sierra) | cellbaseR_1.14.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/cellbaseR |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/cellbaseR |
| Bioc Package Browser | https://code.bioconductor.org/browse/cellbaseR/ |
| Package Short Url | https://bioconductor.org/packages/cellbaseR/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.12 | Source Archive |