Wrench
This package is for version 3.12 of Bioconductor; for the stable, up-to-date release version, see Wrench.
Wrench normalization for sparse count data
Bioconductor version: 3.12
Wrench is a package for normalization sparse genomic count data, like that arising from 16s metagenomic surveys.
Author: Senthil Kumar Muthiah [aut], Hector Corrada Bravo [aut, cre]
Maintainer: Hector Corrada Bravo <hcorrada at gmail.com>
Citation (from within R, enter
citation("Wrench")):
Installation
To install this package, start R (version "4.0") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("Wrench")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("Wrench")| Wrench | HTML | R Script |
| Reference Manual |
Details
| biocViews | Normalization, Sequencing, Software |
| Version | 1.8.0 |
| In Bioconductor since | BioC 3.8 (R-3.5) (5.5 years) |
| License | Artistic-2.0 |
| Depends | R (>= 3.5.0) |
| Imports | limma, matrixStats, locfit, stats, graphics |
| System Requirements | |
| URL | https://github.com/HCBravoLab/Wrench |
| Bug Reports | https://github.com/HCBravoLab/Wrench/issues |
See More
| Suggests | knitr, rmarkdown, metagenomeSeq, DESeq2, edgeR |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | metagenomeSeq |
| Suggests Me | PLNmodels |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | Wrench_1.8.0.tar.gz |
| Windows Binary | Wrench_1.8.0.zip |
| macOS 10.13 (High Sierra) | Wrench_1.8.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/Wrench |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/Wrench |
| Bioc Package Browser | https://code.bioconductor.org/browse/Wrench/ |
| Package Short Url | https://bioconductor.org/packages/Wrench/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.12 | Source Archive |