ResidualMatrix
This package is for version 3.12 of Bioconductor; for the stable, up-to-date release version, see ResidualMatrix.
Creating a DelayedMatrix of Regression Residuals
Bioconductor version: 3.12
Provides delayed computation of a matrix of residuals after fitting a linear model to each column of an input matrix. Also supports partial computation of residuals where selected factors are to be preserved in the output matrix. Implements a number of efficient methods for operating on the delayed matrix of residuals, most notably matrix multiplication and calculation of row/column sums or means.
Author: Aaron Lun [aut, cre, cph]
Maintainer: Aaron Lun <infinite.monkeys.with.keyboards at gmail.com>
citation("ResidualMatrix")):
Installation
To install this package, start R (version "4.0") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("ResidualMatrix")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("ResidualMatrix")| Using the ResidualMatrix | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | BatchEffect, DataRepresentation, ExperimentalDesign, Regression, Software |
| Version | 1.0.0 |
| In Bioconductor since | BioC 3.12 (R-4.0) (3.5 years) |
| License | GPL-3 |
| Depends | |
| Imports | methods, Matrix, S4Vectors, DelayedArray |
| System Requirements | |
| URL | https://github.com/LTLA/ResidualMatrix |
| Bug Reports | https://github.com/LTLA/ResidualMatrix/issues |
See More
| Suggests | testthat, BiocStyle, knitr, rmarkdown, BiocSingular |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | batchelor |
| Suggests Me | BiocSingular |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | ResidualMatrix_1.0.0.tar.gz |
| Windows Binary | ResidualMatrix_1.0.0.zip |
| macOS 10.13 (High Sierra) | ResidualMatrix_1.0.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/ResidualMatrix |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/ResidualMatrix |
| Bioc Package Browser | https://code.bioconductor.org/browse/ResidualMatrix/ |
| Package Short Url | https://bioconductor.org/packages/ResidualMatrix/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.12 | Source Archive |