PubScore
This package is for version 3.12 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see PubScore .
Automatic calculation of literature relevance of genes
Bioconductor version: 3.12
Calculates the importance score for a given gene. The importance score is the total counts of articles in the pubmed database that are a result for that gene AND each term of a list.
Author: Tiago Lubiana [aut, cre], Helder Nakaya [aut, ths]
Maintainer: Tiago Lubiana <tiago.lubiana.alves at usp.br>
citation("PubScore")):
Installation
To install this package, start R (version "4.0") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("PubScore")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("PubScore")| FCBF : Fast Correlation Based Filter for Feature Selection | HTML | R Script |
| Reference Manual | ||
| NEWS | Text | |
| LICENSE | Text |
Details
| biocViews | BiomedicalInformatics, Epigenetics, GeneExpression, GeneSetEnrichment, Genetics, SingleCell, Software, SystemsBiology, Visualization |
| Version | 1.2.0 |
| In Bioconductor since | BioC 3.11 (R-4.0) (4 years) |
| License | MIT + file LICENSE |
| Depends | R (>= 4.0.0) |
| Imports | ggplot2, igraph, ggrepel, rentrez, progress, graphics, dplyr, utils, methods, intergraph, network, sna |
| System Requirements | |
| URL |
See More
| Suggests | FCBF, plotly, SummarizedExperiment, SingleCellExperiment, knitr, rmarkdown, testthat (>= 2.1.0), BiocManager, biomaRt |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | PubScore_1.2.0.tar.gz |
| Windows Binary | PubScore_1.2.0.zip |
| macOS 10.13 (High Sierra) | PubScore_1.2.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/PubScore |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/PubScore |
| Bioc Package Browser | https://code.bioconductor.org/browse/PubScore/ |
| Package Short Url | https://bioconductor.org/packages/PubScore/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.12 | Source Archive |