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GeneBreak

This package is for version 3.12 of Bioconductor; for the stable, up-to-date release version, see GeneBreak.

Gene Break Detection


Bioconductor version: 3.12

Recurrent breakpoint gene detection on copy number aberration profiles.

Author: Evert van den Broek, Stef van Lieshout

Maintainer: Evert van den Broek <vandenbroek.evert at gmail.com>

Citation (from within R, enter citation("GeneBreak")):

Installation

To install this package, start R (version "4.0") and enter: 


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("GeneBreak")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("GeneBreak")
GeneBreak PDF R Script
Reference Manual PDF
NEWS Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews CopyNumberVariation, DNASeq, Genetics, Sequencing, Software, Visualization, WholeGenome, aCGH
Version 1.20.0
In Bioconductor since BioC 3.2 (R-3.2) (8.5 years)
License GPL-2
Depends R (>= 3.2), QDNAseq, CGHcall, CGHbase, GenomicRanges
Imports graphics, methods
System Requirements
URL https://github.com/stefvanlieshout/GeneBreak
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package GeneBreak_1.20.0.tar.gz
Windows Binary GeneBreak_1.20.0.zip
macOS 10.13 (High Sierra) GeneBreak_1.20.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/GeneBreak
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/GeneBreak
Bioc Package Browser https://code.bioconductor.org/browse/GeneBreak/
Package Short Url https://bioconductor.org/packages/GeneBreak/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.12 Source Archive