tcgaWGBSData.hg19
This package is for version 3.11 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see tcgaWGBSData.hg19.
Data
Bioconductor version: 3.11
Data package for WGBS Data in TCGA. Data is stored as SummarizedExperiment Format. See vignette on how to extract the data and perform differential methylation analysis.
Author: Divy Kangeyan <divyswar01 at g.harvard.edu>
Maintainer: Divy Kangeyan <divyswar01 at g.harvard.edu>
citation("tcgaWGBSData.hg19")):
Installation
To install this package, start R (version "4.0") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("tcgaWGBSData.hg19")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("tcgaWGBSData.hg19")| Vignette Title | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | CancerData, ExperimentData, Genome, Homo_sapiens_Data, SequencingData |
| Version | 1.6.0 |
| License | GPL-2 |
| Depends | R (>= 3.5.0), ExperimentHub |
| Imports | bsseq, knitr |
| System Requirements | |
| URL | |
| Bug Reports | https://github.com/aryeelab/tcgaWGBSData.hg19/issues |
See More
| Suggests | |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | tcgaWGBSData.hg19_1.6.0.tar.gz |
| Windows Binary | |
| macOS 10.13 (High Sierra) | |
| Source Repository | git clone https://git.bioconductor.org/packages/tcgaWGBSData.hg19 |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/tcgaWGBSData.hg19 |
| Package Short Url | https://bioconductor.org/packages/tcgaWGBSData.hg19/ |
| Package Downloads Report | Download Stats |