methyvimData
This package is for version 3.11 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see methyvimData.
Example experimental data for use with the methyvim package
Bioconductor version: 3.11
Contains a reduced set of simulated data inspired by data produced by the Infinium EPIC BeadChip assays by Illumina. The example data set is made available to highlight many of the key procedures that are available within the core functions of the methyvim package.
Author: Nima Hejazi [aut, cre]
Maintainer: Nima Hejazi <nhejazi at berkeley.edu>
citation("methyvimData")):
Installation
To install this package, start R (version "4.0") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("methyvimData")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("methyvimData")| Anatomy of the `methyvimData` package | HTML | R Script |
| Reference Manual | ||
| LICENSE | Text |
Details
| biocViews | Clustering, DNAMethylation, DifferentialMethylation, ExperimentData, MethylSeq, MethylationArray |
| Version | 1.10.0 |
| License | file LICENSE |
| Depends | R (>= 3.4.0), minfi |
| Imports | |
| System Requirements | |
| URL |
See More
| Suggests | Biobase, BiocStyle, SummarizedExperiment, knitr, rmarkdown |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | methyvim |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | methyvimData_1.10.0.tar.gz |
| Windows Binary | |
| macOS 10.13 (High Sierra) | |
| Source Repository | git clone https://git.bioconductor.org/packages/methyvimData |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/methyvimData |
| Package Short Url | https://bioconductor.org/packages/methyvimData/ |
| Package Downloads Report | Download Stats |