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CardinalWorkflows

This package is for version 3.11 of Bioconductor; for the stable, up-to-date release version, see CardinalWorkflows.

Datasets and workflows for the Cardinal mass spectrometry imaging package


Bioconductor version: 3.11

Datasets and workflows for Cardinal: DESI and MALDI examples including pig fetus, cardinal painting, and human RCC.

Author: Kylie A. Bemis <k.bemis at northeastern.edu>

Maintainer: Kylie A. Bemis <k.bemis at northeastern.edu>

Citation (from within R, enter citation("CardinalWorkflows")):

Installation

To install this package, start R (version "4.0") and enter: 


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("CardinalWorkflows")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("CardinalWorkflows")
1. Segmentation: Unsupervised analysis workflow HTML R Script
2. Classification: Supervised analysis workflow HTML R Script
3. Class comparision: Statistical testing workflow HTML R Script
Reference Manual PDF
NEWS Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews ExperimentData, ImagingMassSpectrometryData, MassSpectrometryData
Version 1.20.0
License Artistic-2.0
Depends R (>= 2.10), Cardinal
Imports
System Requirements
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Suggests BiocStyle, knitr
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package CardinalWorkflows_1.20.0.tar.gz
Windows Binary
macOS 10.13 (High Sierra)
Source Repository git clone https://git.bioconductor.org/packages/CardinalWorkflows
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/CardinalWorkflows
Package Short Url https://bioconductor.org/packages/CardinalWorkflows/
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