vasp
This package is for version 3.11 of Bioconductor; for the stable, up-to-date release version, see vasp.
Quantification and Visulization of Variations of Splicing in Population
Bioconductor version: 3.11
Discovery of genome-wide variable alternative splicing events from short-read RNA-seq data and visualizations of gene splicing information for publication-quality multi-panel figures.
Author: Huihui Yu, Qian Du, Chi Zhang
Maintainer: Huihui Yu <yuhuihui2011 at foxmail.com>
citation("vasp")):
Installation
To install this package, start R (version "4.0") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("vasp")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("vasp")| manual.pdf | ||
| Variations of Splicing in Population | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | AlternativeSplicing, Clustering, DifferentialExpression, DifferentialSplicing, ImmunoOncology, KEGG, Preprocessing, RNASeq, Software, StatisticalMethod, Visualization |
| Version | 1.0.0 |
| In Bioconductor since | BioC 3.11 (R-4.0) (4 years) |
| License | GPL (>= 2.0) |
| Depends | R (>= 4.0), ballgown |
| Imports | IRanges, GenomicRanges, S4Vectors, Sushi, parallel, matrixStats, GenomicAlignments, GenomeInfoDb, Rsamtools, cluster, stats, graphics, methods |
| System Requirements | |
| URL | https://github.com/yuhuihui2011/vasp |
| Bug Reports | https://github.com/yuhuihui2011/vasp/issues |
See More
| Suggests | knitr, rmarkdown |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | vasp_1.0.0.tar.gz |
| Windows Binary | vasp_1.0.0.zip |
| macOS 10.13 (High Sierra) | vasp_1.0.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/vasp |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/vasp |
| Bioc Package Browser | https://code.bioconductor.org/browse/vasp/ |
| Package Short Url | https://bioconductor.org/packages/vasp/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.11 | Source Archive |