qckitfastq

This package is for version 3.11 of Bioconductor; for the stable, up-to-date release version, see qckitfastq.

FASTQ Quality Control

Bioconductor version: 3.11

Assessment of FASTQ file format with multiple metrics including quality score, sequence content, overrepresented sequence and Kmers.

Author: Wenyue Xing [aut], August Guang [aut, cre]

Maintainer: August Guang <august.guang at gmail.com>

Citation (from within R, enter citation("qckitfastq")):

To install this package, start R (version "4.0") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("qckitfastq")

For older versions of R, please refer to the appropriate Bioconductor release.

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("qckitfastq")

Quality control analysis and visualization using qckitfastq	PDF	R Script
Reference Manual	PDF
NEWS	Text

biocViews	QualityControl, Sequencing, Software
Version	1.4.0
In Bioconductor since	BioC 3.9 (R-3.6) (5 years)
License	Artistic-2.0
Depends
Imports	magrittr, ggplot2, dplyr, seqTools, zlibbioc, data.table, reshape2, grDevices, graphics, stats, utils, Rcpp, rlang, RSeqAn
System Requirements	GNU make
URL

Suggests	knitr, rmarkdown, kableExtra, testthat
Linking To	Rcpp, RSeqAn
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report	Build Report

Follow Installation instructions to use this package in your R session.

Source Package	qckitfastq_1.4.0.tar.gz
Windows Binary	qckitfastq_1.4.0.zip (32- & 64-bit)
macOS 10.13 (High Sierra)	qckitfastq_1.4.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/qckitfastq
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/qckitfastq
Bioc Package Browser	https://code.bioconductor.org/browse/qckitfastq/
Package Short Url	https://bioconductor.org/packages/qckitfastq/
Package Downloads Report	Download Stats
Old Source Packages for BioC 3.11	Source Archive