mBPCR
This package is for version 3.11 of Bioconductor; for the stable, up-to-date release version, see mBPCR.
Bayesian Piecewise Constant Regression for DNA copy number estimation
Bioconductor version: 3.11
It contains functions for estimating the DNA copy number profile using mBPCR with the aim of detecting regions with copy number changes.
Author: P.M.V. Rancoita <rancoita.paola at gmail.com>, with contributions from M. Hutter <marcus.hutter at anu.edu.au>
Maintainer: P.M.V. Rancoita <rancoita.paola at gmail.com>
citation("mBPCR")):
Installation
To install this package, start R (version "4.0") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("mBPCR")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("mBPCR")| mBPCR | R Script | |
| Reference Manual |
Details
| biocViews | CopyNumberVariation, Microarray, SNP, Software, aCGH |
| Version | 1.42.0 |
| In Bioconductor since | BioC 2.5 (R-2.10) (14.5 years) |
| License | GPL (>= 2) |
| Depends | oligoClasses, GWASTools |
| Imports | Biobase, graphics, methods, utils, grDevices |
| System Requirements | |
| URL | http://www.idsia.ch/~paola/mBPCR |
See More
| Suggests | xtable |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | mBPCR_1.42.0.tar.gz |
| Windows Binary | mBPCR_1.42.0.zip |
| macOS 10.13 (High Sierra) | mBPCR_1.42.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/mBPCR |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/mBPCR |
| Bioc Package Browser | https://code.bioconductor.org/browse/mBPCR/ |
| Package Short Url | https://bioconductor.org/packages/mBPCR/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.11 | Source Archive |