epiNEM
This package is for version 3.11 of Bioconductor; for the stable, up-to-date release version, see epiNEM.
epiNEM
Bioconductor version: 3.11
epiNEM is an extension of the original Nested Effects Models (NEM). EpiNEM is able to take into account double knockouts and infer more complex network signalling pathways.
Author: Madeline Diekmann & Martin Pirkl
Maintainer: Martin Pirkl <martin.pirkl at bsse.ethz.ch>
citation("epiNEM")):
Installation
To install this package, start R (version "4.0") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("epiNEM")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("epiNEM")| epiNEM | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | Network, NetworkInference, Pathways, Software, SystemsBiology |
| Version | 1.12.0 |
| In Bioconductor since | BioC 3.5 (R-3.4) (7 years) |
| License | GPL-3 |
| Depends | R (>= 3.4) |
| Imports | BoolNet, e1071, gtools, stats, igraph, utils, lattice, latticeExtra, RColorBrewer, pcalg, minet, grDevices, graph, mnem |
| System Requirements | |
| URL |
See More
| Suggests | knitr, RUnit, BiocGenerics, STRINGdb, devtools, rmarkdown, GOSemSim, AnnotationHub, org.Sc.sgd.db |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | mnem |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | epiNEM_1.12.0.tar.gz |
| Windows Binary | epiNEM_1.12.0.zip |
| macOS 10.13 (High Sierra) | epiNEM_1.12.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/epiNEM |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/epiNEM |
| Bioc Package Browser | https://code.bioconductor.org/browse/epiNEM/ |
| Package Short Url | https://bioconductor.org/packages/epiNEM/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.11 | Source Archive |