biocGraph
This package is for version 3.11 of Bioconductor; for the stable, up-to-date release version, see biocGraph.
Graph examples and use cases in Bioinformatics
Bioconductor version: 3.11
This package provides examples and code that make use of the different graph related packages produced by Bioconductor.
Author: Li Long <li.long at isb-sib.ch>, Robert Gentleman <rgentlem at fhcrc.org>, Seth Falcon <sethf at fhcrc.org> Florian Hahne <fhahne at fhcrc.org>
Maintainer: Florian Hahne <florian.hahne at novartis.com>
citation("biocGraph")):
Installation
To install this package, start R (version "4.0") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("biocGraph")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("biocGraph")| Examples of plotting graphs Using Rgraphviz | R Script | |
| HOWTO layout pathways | R Script | |
| Reference Manual |
Details
| biocViews | GraphAndNetwork, Software, Visualization |
| Version | 1.50.0 |
| In Bioconductor since | BioC 2.1 (R-2.6) (16.5 years) |
| License | Artistic-2.0 |
| Depends | Rgraphviz, graph |
| Imports | Rgraphviz, geneplotter, graph, BiocGenerics, methods |
| System Requirements | |
| URL |
See More
| Suggests | fibroEset, geneplotter, hgu95av2.db |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | EnrichmentBrowser |
| Suggests Me | BiocCaseStudies |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | biocGraph_1.50.0.tar.gz |
| Windows Binary | biocGraph_1.50.0.zip |
| macOS 10.13 (High Sierra) | biocGraph_1.50.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/biocGraph |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/biocGraph |
| Bioc Package Browser | https://code.bioconductor.org/browse/biocGraph/ |
| Package Short Url | https://bioconductor.org/packages/biocGraph/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.11 | Source Archive |