Vega
This package is for version 3.11 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see Vega.
An R package for copy number data segmentation
Bioconductor version: 3.11
Vega (Variational Estimator for Genomic Aberrations) is an algorithm that adapts a very popular variational model (Mumford and Shah) used in image segmentation so that chromosomal aberrant regions can be efficiently detected.
Author: Sandro Morganella
Maintainer: Sandro Morganella <sandro at ebi.ac.uk>
citation("Vega")):
Installation
To install this package, start R (version "4.0") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("Vega")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("Vega")| Vega | R Script | |
| Reference Manual |
Details
| biocViews | CopyNumberVariation, Software, aCGH |
| Version | 1.35.0 |
| In Bioconductor since | BioC 2.8 (R-2.13) (13 years) |
| License | GPL-2 |
| Depends | R (>= 2.10) |
| Imports | |
| System Requirements | |
| URL |
See More
| Suggests | |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | Vega_1.35.0.tar.gz |
| Windows Binary | Vega_1.35.0.zip (32- & 64-bit) |
| macOS 10.13 (High Sierra) | |
| Source Repository | git clone https://git.bioconductor.org/packages/Vega |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/Vega |
| Bioc Package Browser | https://code.bioconductor.org/browse/Vega/ |
| Package Short Url | https://bioconductor.org/packages/Vega/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.11 | Source Archive |