TreeAndLeaf
This package is for version 3.11 of Bioconductor; for the stable, up-to-date release version, see TreeAndLeaf.
An alternative to dendrogram visualization and insertion of multiple layers of information
Bioconductor version: 3.11
TreeAndLeaf package comes as an alternative to solve problems regarding dendrogram plotting, such as the lack of space when the dendrogram is too large and the need for adding more layers of information. It treats a whole dendrogram as a tree, in which the observations are represented by the leaves.
Author: Leonardo Kume, Luis E. A. Rizzardi, Milena A. Cardoso, Mauro A. A. Castro
Maintainer: Milena Cardoso <milenandreuzo at gmail.com>
citation("TreeAndLeaf")):
Installation
To install this package, start R (version "4.0") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("TreeAndLeaf")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("TreeAndLeaf")| TreeAndLeaf: an alternative to dendrogram visualization. | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | DataRepresentation, GraphAndNetwork, Infrastructure, Network, Software, Visualization |
| Version | 1.0.0 |
| In Bioconductor since | BioC 3.11 (R-4.0) (4 years) |
| License | Artistic-2.0 |
| Depends | R (>= 4.0) |
| Imports | RedeR, igraph, ape, methods |
| System Requirements | |
| URL |
See More
| Suggests | knitr, rmarkdown, BiocStyle, RUnit, BiocGenerics, stringr, RColorBrewer, geneplast |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | TreeAndLeaf_1.0.0.tar.gz |
| Windows Binary | TreeAndLeaf_1.0.0.zip |
| macOS 10.13 (High Sierra) | TreeAndLeaf_1.0.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/TreeAndLeaf |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/TreeAndLeaf |
| Bioc Package Browser | https://code.bioconductor.org/browse/TreeAndLeaf/ |
| Package Short Url | https://bioconductor.org/packages/TreeAndLeaf/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.11 | Source Archive |