TSCAN

This package is for version 3.11 of Bioconductor; for the stable, up-to-date release version, see TSCAN.

TSCAN: Tools for Single-Cell ANalysis

Bioconductor version: 3.11

TSCAN enables users to easily construct and tune pseudotemporal cell ordering as well as analyzing differentially expressed genes. TSCAN comes with a user-friendly GUI written in shiny. More features will come in the future.

Author: Zhicheng Ji, Hongkai Ji

Maintainer: Zhicheng Ji <zji4 at jhu.edu>

Citation (from within R, enter citation("TSCAN")):

Installation

To install this package, start R (version "4.0") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("TSCAN")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("TSCAN")

TSCAN: Tools for Single-Cell ANalysis	PDF	R Script
Reference Manual	PDF

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	GUI, GeneExpression, Software, Visualization
Version	1.26.0
In Bioconductor since	BioC 3.0 (R-3.1) (9.5 years)
License	GPL(>=2)
Depends	R (>= 2.10.0)
Imports	ggplot2, shiny, plyr, grid, fastICA, igraph, combinat, mgcv, mclust, gplots
System Requirements
URL

Suggests	knitr
Linking To
Enhances
Depends On Me
Imports Me	ctgGEM
Suggests Me
Links To Me
Build Report	Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	TSCAN_1.26.0.tar.gz
Windows Binary	TSCAN_1.26.0.zip
macOS 10.13 (High Sierra)	TSCAN_1.26.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/TSCAN
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/TSCAN
Bioc Package Browser	https://code.bioconductor.org/browse/TSCAN/
Package Short Url	https://bioconductor.org/packages/TSCAN/
Package Downloads Report	Download Stats
Old Source Packages for BioC 3.11	Source Archive