PGSEA

This package is for version 3.11 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see PGSEA.

Parametric Gene Set Enrichment Analysis

Bioconductor version: 3.11

Parametric Analysis of Gene Set Enrichment

Author: Kyle Furge <kyle.furge at vai.org> and Karl Dykema <karl.dykema at vai.org>

Maintainer: Karl Dykema <karl.dykema at vai.org>

Citation (from within R, enter citation("PGSEA")):

Installation

To install this package, start R (version "4.0") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("PGSEA")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("PGSEA")

HOWTO: PGSEA	PDF	R Script
HOWTO: PGSEA Example Workflow	PDF	R Script
Reference Manual	PDF

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	Microarray, Software
Version	1.61.0
In Bioconductor since	BioC 2.0 (R-2.5) (17 years)
License	GPL-2
Depends	R (>= 2.10), GO.db, KEGG.db, AnnotationDbi, annaffy, methods, Biobase(>= 2.5.5)
Imports
System Requirements
URL

Suggests	GSEABase, GEOquery, org.Hs.eg.db, hgu95av2.db, limma
Linking To
Enhances
Depends On Me	GeneExpressionSignature
Imports Me
Suggests Me	gskb
Links To Me
Build Report	Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	PGSEA_1.61.0.tar.gz
Windows Binary	PGSEA_1.61.0.zip
macOS 10.13 (High Sierra)
Source Repository	git clone https://git.bioconductor.org/packages/PGSEA
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/PGSEA
Bioc Package Browser	https://code.bioconductor.org/browse/PGSEA/
Package Short Url	https://bioconductor.org/packages/PGSEA/
Package Downloads Report	Download Stats
Old Source Packages for BioC 3.11	Source Archive