PCpheno
This package is for version 3.11 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see PCpheno.
Phenotypes and cellular organizational units
Bioconductor version: 3.11
Tools to integrate, annotate, and link phenotypes to cellular organizational units such as protein complexes and pathways.
Author: Nolwenn Le Meur and Robert Gentleman
Maintainer: Nolwenn Le Meur <nlemeur at gmail.com>
citation("PCpheno")):
Installation
To install this package, start R (version "4.0") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("PCpheno")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("PCpheno")| PCpheno Vignette | R Script | |
| Reference Manual |
Details
| biocViews | GraphAndNetwork, Network, Proteomics, Software |
| Version | 1.50.0 |
| In Bioconductor since | BioC 2.2 (R-2.7) (16 years) |
| License | Artistic-2.0 |
| Depends | R (>= 2.10), Category, ScISI(>= 1.3.0), SLGI, ppiStats, ppiData, annotate(>= 1.17.4) |
| Imports | AnnotationDbi, Biobase, Category, GO.db, graph, graphics, GSEABase, KEGG.db, methods, ScISI, stats, stats4 |
| System Requirements | |
| URL |
See More
| Suggests | KEGG.db, GO.db, org.Sc.sgd.db |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | PCpheno_1.50.0.tar.gz |
| Windows Binary | PCpheno_1.50.0.zip |
| macOS 10.13 (High Sierra) | PCpheno_1.50.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/PCpheno |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/PCpheno |
| Bioc Package Browser | https://code.bioconductor.org/browse/PCpheno/ |
| Package Short Url | https://bioconductor.org/packages/PCpheno/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.11 | Source Archive |