MergeMaid
This package is for version 3.11 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see MergeMaid.
Merge Maid
Bioconductor version: 3.11
The functions in this R extension are intended for cross-study comparison of gene expression array data. Required from the user is gene expression matrices, their corresponding gene-id vectors and other useful information, and they could be 'list','matrix', or 'ExpressionSet'. The main function is 'mergeExprs' which transforms the input objects into data in the merged format, such that common genes in different datasets can be easily found. And the function 'intcor' calculate the correlation coefficients. Other functions use the output from 'modelOutcome' to graphically display the results and cross-validate associations of gene expression data with survival.
Author: Xiaogang Zhong <zhong at ams.jhu.edu> Leslie Cope <cope at jhu.edu> Elizabeth Garrett <esg at jhu.edu> Giovanni Parmigiani <gp at jhu.edu>
Maintainer: Xiaogang Zhong <zhong at ams.jhu.edu>
citation("MergeMaid")):
Installation
To install this package, start R (version "4.0") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("MergeMaid")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("MergeMaid")| MergeMaid primer | |
| Reference Manual |
Details
| biocViews | DifferentialExpression, Microarray, Software, Visualization |
| Version | 2.59.0 |
| In Bioconductor since | BioC 1.6 (R-2.1) or earlier (> 19 years) |
| License | GPL (>= 2) |
| Depends | R (>= 2.10.0), survival, Biobase, MASS, methods |
| Imports | |
| System Requirements | |
| URL | http://astor.som.jhmi.edu/MergeMaid |
See More
| Suggests | |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | CrossICC, metaArray, XDE |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | MergeMaid_2.59.0.tar.gz |
| Windows Binary | MergeMaid_2.59.0.zip |
| macOS 10.13 (High Sierra) | |
| Source Repository | git clone https://git.bioconductor.org/packages/MergeMaid |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/MergeMaid |
| Bioc Package Browser | https://code.bioconductor.org/browse/MergeMaid/ |
| Package Short Url | https://bioconductor.org/packages/MergeMaid/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.11 | Source Archive |