ExploreModelMatrix
This package is for version 3.11 of Bioconductor; for the stable, up-to-date release version, see ExploreModelMatrix.
Graphical Exploration of Design Matrices
Bioconductor version: 3.11
Given a sample data table and a design formula, generate an interactive application to explore the resulting design matrix.
Author: Charlotte Soneson [aut, cre] 
, Federico Marini [aut] , Michael Love [aut] , Florian Geier [aut] , Michael Stadler [aut]
Maintainer: Charlotte Soneson <charlottesoneson at gmail.com>
citation("ExploreModelMatrix")):
Installation
To install this package, start R (version "4.0") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("ExploreModelMatrix")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("ExploreModelMatrix")| ExploreModelMatrix | HTML | R Script |
| ExploreModelMatrix-deploy | HTML | R Script |
| Reference Manual | ||
| NEWS | Text | |
| LICENSE | Text |
Details
| biocViews | DifferentialExpression, ExperimentalDesign, Regression, Software |
| Version | 1.0.2 |
| In Bioconductor since | BioC 3.11 (R-4.0) (4 years) |
| License | MIT + file LICENSE |
| Depends | |
| Imports | shiny, shinydashboard, DT, cowplot, utils, dplyr, magrittr, tidyr, ggplot2, stats, methods, rintrojs, scales, tibble, MASS, limma, S4Vectors |
| System Requirements | |
| URL | https://github.com/csoneson/ExploreModelMatrix |
| Bug Reports | https://github.com/csoneson/ExploreModelMatrix/issues |
See More
| Suggests | testthat (>= 2.1.0), knitr, rmarkdown, htmltools, BiocStyle |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | ExploreModelMatrix_1.0.2.tar.gz |
| Windows Binary | ExploreModelMatrix_1.0.2.zip |
| macOS 10.13 (High Sierra) | ExploreModelMatrix_1.0.2.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/ExploreModelMatrix |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/ExploreModelMatrix |
| Bioc Package Browser | https://code.bioconductor.org/browse/ExploreModelMatrix/ |
| Package Short Url | https://bioconductor.org/packages/ExploreModelMatrix/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.11 | Source Archive |