Autotuner
This package is for version 3.11 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see Autotuner.
Automated parameter selection for untargeted metabolomics data processing
Bioconductor version: 3.11
This package is designed to help faciliate data processing in untargeted metabolomics. To do this, the algorithm contained within the package performs statistical inference on raw data to come up with the best set of parameters to process the raw data.
Author: Craig McLean
Maintainer: Craig McLean <craigmclean23 at gmail.com>
citation("Autotuner")):
Installation
To install this package, start R (version "4.0") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("Autotuner")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("Autotuner")| Autotuner | HTML | R Script |
| Reference Manual | ||
| NEWS | Text | |
| LICENSE | Text |
Details
| biocViews | MassSpectrometry, Metabolomics, Software |
| Version | 1.2.0 |
| In Bioconductor since | BioC 3.10 (R-3.6) (4.5 years) |
| License | MIT + file LICENSE |
| Depends | R (>= 3.6), methods, Biobase, MSnbase(>= 2.9.3) |
| Imports | RColorBrewer, mzR, assertthat, scales, entropy, cluster, grDevices, graphics, stats, utils |
| System Requirements | |
| URL | https://github.com/crmclean/Autotuner/ |
| Bug Reports | https://github.com/crmclean/Autotuner/issues |
See More
| Suggests | testthat (>= 2.1.0), covr, devtools, knitr, rmarkdown, mtbls2 |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | Autotuner_1.2.0.tar.gz |
| Windows Binary | Autotuner_1.2.0.zip |
| macOS 10.13 (High Sierra) | Autotuner_1.2.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/Autotuner |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/Autotuner |
| Bioc Package Browser | https://code.bioconductor.org/browse/Autotuner/ |
| Package Short Url | https://bioconductor.org/packages/Autotuner/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.11 | Source Archive |