seqc
This package is for version 3.10 of Bioconductor; for the stable, up-to-date release version, see seqc.
RNA-seq data generated from SEQC (MAQC-III) study
Bioconductor version: 3.10
The SEQC/MAQC-III Consortium has produced benchmark RNA-seq data for the assessment of RNA sequencing technologies and data analysis methods (Nat Biotechnol, 2014). Billions of sequence reads have been generated from ten different sequencing sites. This package contains the summarized read count data for ~2000 sequencing libraries. It also includes all the exon-exon junctions discovered from the study. TaqMan RT-PCR data for ~1000 genes and ERCC spike-in sequence data are included in this package as well.
Author: Yang Liao and Wei Shi with contributions from Gordon K Smyth and Steve Lianoglou.
Maintainer: Yang Liao <liao at wehi.edu.au> and Wei Shi <shi at wehi.edu.au>
citation("seqc")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("seqc")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("seqc")| SEQC Vignette | R Script | |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | ExperimentData, RNASeqData, SequencingData, qPCRData |
| Version | 1.20.0 |
| License | GPL-3 |
| Depends | R (>= 2.10) |
| Imports | utils, Biobase |
| System Requirements | |
| URL | http://bioconductor.org/packages/release/data/experiment/html/seqc.html |
See More
| Suggests | |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
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| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | seqc_1.20.0.tar.gz |
| Windows Binary | |
| Mac OS X 10.11 (El Capitan) | |
| Source Repository | git clone https://git.bioconductor.org/packages/seqc |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/seqc |
| Package Short Url | https://bioconductor.org/packages/seqc/ |
| Package Downloads Report | Download Stats |