allenpvc

This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.

This package is for version 3.10 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see allenpvc.

GEO accession data GSE71585 as a SingleCellExperiment


Bioconductor version: 3.10

Celular taxonomy of the primary visual cortex in adult mice based on single cell RNA-sequencing from a study performed by the Allen Institute for Brain Science. In said study 49 transcriptomic cell types are identified.

Author: Diogo P. P. Branco

Maintainer: Diogo P. P. Branco <diogo.pp.branco at gmail.com>

Citation (from within R, enter citation("allenpvc")):

Installation

To install this package, start R (version "3.6") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("allenpvc")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("allenpvc")
Vignette Title HTML R Script
Reference Manual PDF

Details

biocViews ExperimentData, ExpressionData, RNASeqData, SingleCellData
Version 1.4.0
License CC0
Depends R (>= 3.5.0), AnnotationHub, ExperimentHub(>= 1.7.0), SingleCellExperiment
Imports
System Requirements
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Suggests BiocStyle, knitr, rmarkdown
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Depends On Me
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package allenpvc_1.4.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Source Repository git clone https://git.bioconductor.org/packages/allenpvc
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/allenpvc
Package Short Url https://bioconductor.org/packages/allenpvc/
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