RcisTarget.hg19.motifDBs.cisbpOnly.500bp
This package is for version 3.10 of Bioconductor; for the stable, up-to-date release version, see RcisTarget.hg19.motifDBs.cisbpOnly.500bp.
RcisTarget motif databases for human (hg19) - Subset of 4.6k motifs
Bioconductor version: 3.10
RcisTarget databases: Gene-based motif rankings and annotation to transcription factors. This package contains a subset of 4.6k motifs (cisbp motifs), scored only within 500bp upstream and the TSS. See RcisTarget tutorial to download the full databases, containing 20k motifs and search space up to 10kbp around the TSS.
Author: Sara Aibar, Gert Hulselmans, Stein Aerts. Laboratory of Computational Biology, KU Leuven Center for Human Genetics. Leuven, Belgium.
Maintainer: Sara Aibar <sara.aibar at kuleuven.vib.be>
citation("RcisTarget.hg19.motifDBs.cisbpOnly.500bp")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("RcisTarget.hg19.motifDBs.cisbpOnly.500bp")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
| Reference Manual | |
| NEWS | Text |
Details
| biocViews | ExperimentData, Homo_sapiens_Data |
| Version | 1.6.0 |
| License | GPL-3 |
| Depends | R (>= 3.3) |
| Imports | data.table |
| System Requirements | |
| URL | http://scenic.aertslab.org |
See More
| Suggests | |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | RcisTarget |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | RcisTarget.hg19.motifDBs.cisbpOnly.500bp_1.6.0.tar.gz |
| Windows Binary | |
| Mac OS X 10.11 (El Capitan) | |
| Source Repository | git clone https://git.bioconductor.org/packages/RcisTarget.hg19.motifDBs.cisbpOnly.500bp |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/RcisTarget.hg19.motifDBs.cisbpOnly.500bp |
| Package Short Url | https://bioconductor.org/packages/RcisTarget.hg19.motifDBs.cisbpOnly.500bp/ |
| Package Downloads Report | Download Stats |