DAPARdata
This package is for version 3.10 of Bioconductor; for the stable, up-to-date release version, see DAPARdata.
Data accompanying the DAPAR and Prostar packages
Bioconductor version: 3.10
Mass-spectrometry based UPS proteomics data sets from Ramus C, Hovasse A, Marcellin M, Hesse AM, Mouton-Barbosa E, Bouyssie D, Vaca S, Carapito C, Chaoui K, Bruley C, Garin J, Cianferani S, Ferro M, Dorssaeler AV, Burlet-Schiltz O, Schaeffer C, Coute Y, Gonzalez de Peredo A. Spiked proteomic standard dataset for testing label-free quantitative software and statistical methods. Data Brief. 2015 Dec 17;6:286-94 and Giai Gianetto, Q., Combes, F., Ramus, C., Bruley, C., Coute, Y., Burger, T. (2016). Calibration plot for proteomics: A graphical tool to visually check the assumptions underlying FDR control in quantitative experiments. Proteomics, 16(1), 29-32.
Author: Samuel Wieczorek and Florence Combes
Maintainer: Samuel Wieczorek <samuel.wieczorek at cea.fr>
citation("DAPARdata")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("DAPARdata")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("DAPARdata")| Exp1_R25_pept.pdf | |
| Exp1_R25_prot.pdf | |
| Exp1_R2_pept.pdf | |
| Exp1_R2_prot.pdf | |
| Exp2_R100_pept.pdf | |
| Exp2_R100_prot.pdf | |
| Exp2_R10_pept.pdf | |
| Exp2_R10_prot.pdf | |
| Exp2_R2_pept.pdf | |
| Exp2_R2_prot.pdf | |
| Reference Manual | |
| NEWS | Text |
Details
| biocViews | ExperimentData, MassSpectrometryData |
| Version | 1.16.0 |
| License | GPL-2 |
| Depends | R (>= 3.5) |
| Imports | utils, knitr, MSnbase |
| System Requirements | |
| URL |
See More
| Suggests | DAPAR, Prostar |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | DAPAR, Prostar |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | DAPARdata_1.16.0.tar.gz |
| Windows Binary | |
| Mac OS X 10.11 (El Capitan) | |
| Source Repository | git clone https://git.bioconductor.org/packages/DAPARdata |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/DAPARdata |
| Package Short Url | https://bioconductor.org/packages/DAPARdata/ |
| Package Downloads Report | Download Stats |