phastCons100way.UCSC.hg19
This package is for version 3.10 of Bioconductor; for the stable, up-to-date release version, see phastCons100way.UCSC.hg19.
UCSC phastCons conservation scores for hg19
Bioconductor version: 3.10
Store UCSC phastCons conservation scores for the human genome (hg19) calculated from multiple alignments with other 99 vertebrate species.
Author: Robert Castelo [aut, cre]
Maintainer: Robert Castelo <robert.castelo at upf.edu>
Citation (from within R, enter
citation("phastCons100way.UCSC.hg19")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("phastCons100way.UCSC.hg19")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
| Reference Manual | |
| NEWS | Text |
Details
| biocViews | AnnotationData, Genetics, GenomicScores, Homo_sapiens |
| Version | 3.7.2 |
| License | Artistic-2.0 |
| Depends | R (>= 3.0.0), GenomicScores(>= 1.3.19) |
| Imports | utils, S4Vectors, IRanges, GenomicRanges, GenomeInfoDb, BSgenome |
| System Requirements | |
| URL |
See More
| Suggests | |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | RareVariantVis |
| Suggests Me | ATACseqQC, GenomicScores, VariantFiltering |
| Links To Me |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | phastCons100way.UCSC.hg19_3.7.2.tar.gz |
| Windows Binary | |
| Mac OS X 10.11 (El Capitan) | |
| Package Short Url | https://bioconductor.org/packages/phastCons100way.UCSC.hg19/ |
| Package Downloads Report | Download Stats |