hpAnnot
This package is for version 3.10 of Bioconductor; for the stable, up-to-date release version, see hpAnnot.
Anotation package for Hipathia package
Bioconductor version: 3.10
Package containing example and annotation data for Hipathia package. Hipathia is a method for the computation of signal transduction along signaling pathways from transcriptomic data. The method is based on an iterative algorithm which is able to compute the signal intensity passing through the nodes of a network by taking into account the level of expression of each gene and the intensity of the signal arriving to it. It also provides a new approach to functional analysis allowing to compute the signal arriving to the functions annotated to each pathway. Hipathia depends on this package to be functional.
Author: Marta R. Hidalgo [aut, cre], José Carbonell-Caballero [ctb], Francisco Salavert [ctb], Alicia Amadoz [ctb], Çankut Cubuk [ctb], Joaquin Dopazo [ctb]
Maintainer: Marta R. Hidalgo <marta.hidalgo at outlook.es>
citation("hpAnnot")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("hpAnnot")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("hpAnnot")| hpAnnot | R Script | |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | AnnotationData, CustomDBSchema, FunctionalAnnotation, PackageType |
| Version | 1.0.1 |
| License | GPL-2 |
| Depends | R (>= 3.5) |
| Imports | |
| System Requirements | |
| URL |
See More
| Suggests | BiocStyle, knitr, rmarkdown |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | hpAnnot_1.0.1.tar.gz |
| Windows Binary | |
| Mac OS X 10.11 (El Capitan) | |
| Package Short Url | https://bioconductor.org/packages/hpAnnot/ |
| Package Downloads Report | Download Stats |