grasp2db
This package is for version 3.10 of Bioconductor; for the stable, up-to-date release version, see grasp2db.
grasp2db, sqlite wrap of GRASP 2.0
Bioconductor version: 3.10
grasp2db, sqlite wrap of NHLBI GRASP 2.0, an extended GWAS catalog.
Author: VJ Carey <stvjc at channing.harvard.edu>
Maintainer: VJ Carey <stvjc at channing.harvard.edu>
Citation (from within R, enter
citation("grasp2db")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("grasp2db")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("grasp2db")| grasp2db: interface to a high density GWAS catalogue | R Script | |
| Notes on Bioconductor's GRASP2 database curation | HTML | R Script |
| Reference Manual | ||
| README | Text | |
| LICENSE | Text |
Details
| biocViews | AnnotationData |
| Version | 1.1.0 |
| License | Artistic-2.0 + file LICENSE |
| Depends | RSQLite, dplyr, dbplyr |
| Imports | methods, utils, stats, GenomeInfoDb, AnnotationHub, digest |
| System Requirements | |
| URL |
See More
| Suggests | gwascat, knitr |
| Linking To | |
| Enhances | AnnotationHubData |
| Depends On Me | |
| Imports Me | |
| Suggests Me | AnnotationHubData |
| Links To Me |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | grasp2db_1.1.0.tar.gz |
| Windows Binary | |
| Mac OS X 10.11 (El Capitan) | |
| Package Short Url | https://bioconductor.org/packages/grasp2db/ |
| Package Downloads Report | Download Stats |