TxDb.Hsapiens.UCSC.hg19.knownGene
This package is for version 3.10 of Bioconductor; for the stable, up-to-date release version, see TxDb.Hsapiens.UCSC.hg19.knownGene.
Annotation package for TxDb object(s)
Bioconductor version: 3.10
Exposes an annotation databases generated from UCSC by exposing these as TxDb objects
Author: Marc Carlson, Bioconductor Package Maintainer <maintainer at bioconductor.org> [cre]
Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>
Citation (from within R, enter
citation("TxDb.Hsapiens.UCSC.hg19.knownGene")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("TxDb.Hsapiens.UCSC.hg19.knownGene")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
| Reference Manual |
Details
| biocViews | AnnotationData, Genetics, Homo_sapiens, TxDb |
| Version | 3.2.2 |
| License | Artistic-2.0 |
| Depends | GenomicFeatures(>= 1.21.30) |
| Imports | AnnotationDbi |
| System Requirements | |
| URL |
See More
| Suggests | |
| Linking To | |
| Enhances | |
| Depends On Me | annotation, chimera, FDb.InfiniumMethylation.hg19, FunciSNP, Homo.sapiens, variants, vulcan |
| Imports Me | ALPS, appreci8R, ChIPQC, ChIPseeker, decompTumor2Sig, HiLDA, profileplyr, RareVariantVis, rCGH |
| Suggests Me | AllelicImbalance, AnnotationDbi, annotatr, ATACseqQC, beadarray, BiocOncoTK, BiocParallel, biomvRCNS, biovizBase, BSgenome.Hsapiens.UCSC.hg19, bumphunter, cgdv17, chipenrich.data, ChIPpeakAnno, chromPlot, cpvSNP, CRISPRseek, derfinder, derfinderPlot, esATAC, GA4GHclient, GA4GHshiny, gage, geneAttribution, GENESIS, GenomicAlignments, GenomicFeatures, GenomicRanges, GenomicScores, GenVisR, ggbio, gmapR, gQTLstats, groHMM, GUIDEseq, HTSeqGenie, InPAS, karyoploteR, MAST, methyAnalysis, MutationalPatterns, OUTRIDER, PureCN, R3CPET, regionReport, RiboProfiling, rtracklayer, SGSeq, SigFuge, SplicingGraphs, SummarizedExperiment, TCGAutils, TFEA.ChIP, trackViewer, transcriptR, tximport, VariantAnnotation, VariantFiltering |
| Links To Me |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | TxDb.Hsapiens.UCSC.hg19.knownGene_3.2.2.tar.gz |
| Windows Binary | |
| Mac OS X 10.11 (El Capitan) | |
| Package Short Url | https://bioconductor.org/packages/TxDb.Hsapiens.UCSC.hg19.knownGene/ |
| Package Downloads Report | Download Stats |