CHANGED IN VERSION 1.20.3
-------------------------
BUG FIXES
o updated URL of the /data/gene_database/ location to point directly to bridgedb.github.io
o now uses the smaller Bs mapping database as test data in the example
o updated the code for getDatabase() to allow downloading data from any location provided by /data/gene_database/
CHANGED IN VERSION 1.20.2
-------------------------
BUG FIXES
o no longer tries to get Derby file names online
CHANGED IN VERSION 1.17.5
-------------------------
NEW FEATURES
o added a link to the vignette to the Figshare Metabolics ID mapping
database collection
CHANGED IN VERSION 1.17.4
-------------------------
BUG FIXES
o added missing link to the Bioconductor webpage in the vignette
CHANGED IN VERSION 1.17.3
-------------------------
NEW FEATURES
o added an attempt to have BioSchemas annotation in the vignette
o now points to the issue tracker of the new GitHub code repository
CHANGED IN VERSION 1.17.2
-------------------------
NEW FEATURES
o added getAttributes() that returns the attributes (properties) for the
given identifier
CHANGED IN VERSION 1.17.1
-------------------------
NEW FEATURES
o server location for getDatabase() can now be configured with the website
parameter
BUG FIXES
o Fixed the default database download server URL (now uses https)
CHANGED IN VERSION 1.15.1
-------------------------
NEW FEATURES
o README now uses BiocManager for instructions how to install the package
CHANGED IN VERSION 1.15.1
-------------------------
NEW FEATURES
o Updated to BridgeDb 2.3.0
CHANGED IN VERSION 1.13.6
-------------------------
NEW FEATURES
o Uses BibTeX again (in the RMarkdown tutorial)
o Added a section on metabolomics to the tutorial
CHANGED IN VERSION 1.13.5
-------------------------
NEW FEATURES
o Added to the Metabolomics and Cheminformatics views
CHANGED IN VERSION 1.13.4
-------------------------
NEW FEATURES
o Converted the vignette to RMarkdown
CHANGED IN VERSION 1.13.3
-------------------------
BUG FIXES
o Fixed the URLs for GitHub and the issue tracker
CHANGED IN VERSION 1.13.2
-------------------------
NEW FEATURES
o Restored the original README.md for visitors of GitHub particularly
CHANGED IN VERSION 1.13.1
-------------------------
NEW FEATURES
o Added information on how to manually download
mapping databases
CHANGED IN VERSION 1.11.5
-------------------------
NEW FEATURES
o Added ORCID id for a few authors/maintainers
CHANGED IN VERSION 1.11.4
-------------------------
BUG FIXES
o Updated to BridgeDb 2.2.2: fixes recognition of new
HMDB identifiers (closes #1)
CHANGED IN VERSION 1.10.2
-------------------------
BUG FIXES
o Fixed the NEWS for 1.10.1
CHANGED IN VERSION 1.10.1
-------------------------
NEW FEATURES
o More unit tests
BUG FIXES
o Updated to BridgeDb 2.2.0: fixes loading of mapping
files with new data sources
CHANGED IN VERSION 1.9.3
------------------------
NEW FEATURES
o adds a method to register a new DataSource
o adds methods to see if a DataSource exists, based
on the full name and system code
BUG FIXES
o Updated file pattern for getBridgeNames()
CHANGED IN VERSION 1.7.2
------------------------
NEW FEATURES
o Now has a test suite
SIGNIFICANT USER-LEVEL CHANGES
o Depends on R 3.3
BUG FIXES
o Bug fixes introduced in versions 1.3.2 and 1.3.3
CHANGES IN VERSION 1.3.3
------------------------
BUG FIXED
o fixed returning of GO mappings (Lars Eijssen)
CHANGES IN VERSION 1.3.2
------------------------
BUG FIXED
o fixed the getting for BridgeDb database names for recent download server
updates
o added better documentation for loadDatabase()
CHANGES IN VERSION 1.3.1
------------------------
SIGNIFICANT USER-VISIBLE CHANGES
o Depend on R 3.2
CHANGES IN VERSION 1.3.0
------------------------
SIGNIFICANT USER-VISIBLE CHANGES
o getOrganismCode() now throws an error when the given species was not found
o map() can now also return all possible mappings
o getBridgeNames() now also supports other locations and custom file name
patterns
NEW FEATURES
o adds unit testing (with testthat)
o updated vignette for new user-visible changes
o updated the BridgeDb libraries to version 2.1.0
BUG FIXES
o added license infromation for Java libraries (Apache Derby and BridgeDb)
o fixed a wrong descriptiong in the documentation of loadDatabse()
o download of BridgeDb identifier mappings files is now forces as binary
fixing the downloading on MS-Windows platforms
o source code line length according to Bioconductor
CHANGES IN VERSION 0.99.1
-----------------------
SIGNIFICANT USER-VISIBLE CHANGES
o No changes
NEW FEATURES
o New package
BUG FIXES
o No changes classified as 'bug fixes' (package under active
development)